######
# There are eight columns in the human-mouse pseudogene ortholog file, where the the
# columns 1-4 are for mouse pseudogene coordinates, and the columns 5-8 are for human 
# pseudogene coordinates. Each coordinate for a pseudogene annotation contains chromosome, 
# star and end position, and the strand. Start and end positions of pseudogenes are 
# 0-based, half inclusive, as in bed format. The ortholog file is in a tab-delimited format.
######
Mm_chr	Mm_start	Mm_end	Mm_strand	Hs_chr	Hs_start	Hs_end	Hs_strand
chr10	22063244	22065595	+	chr1	236273360	236275670	+
chr10	62164943	62165344	+	chr7	27087787	27088247	+
chr10	85417704	85417884	+	chr8	103166777	103166953	+
chr10	92005152	92006415	-	chr5	14797233	14798509	-
chr1	11239640	11239913	+	chr8	69089002	69089456	+
chr1	114047588	114048330	+	chr3	42018499	42019526	+
chr1	144989925	144991183	-	chr3	185135282	185136566	-
chr1	146800057	146801389	+	chr2	104110698	104112300	+
chr11	52218825	52218982	+	chr1	179106898	179107069	+
chr1	177850515	177851820	+	chr1	242121038	242122359	+
chr1	180196334	180197234	+	chr1	111866454	111866699	+
chr11	93512372	93513280	+	chr11	101464750	101465665	+
chr1	193614864	193615193	-	chr12	132611005	132611309	-
chr11	97830105	97830546	+	chr14	52584319	52584713	+
chr12	107697438	107697709	+	chr2	26217662	26217950	+
chr1	24619613	24619958	-	chr9	104555735	104555975	-
chr1	24620027	24620810	-	chr9	85042165	85042940	-
chr12	75806232	75806632	-	chr14	62981592	62981841	-
chr12	84961633	84962018	-	chr22	31917184	31917578	-
chr12	95297169	95297846	-	chr2	207551240	207552086	-
chr13	118246642	118247882	-	chr3	141189475	141190744	-
chr13	19912646	19913523	+	chr2	124519746	124520647	+
chr13	34190859	34190961	+	chr8	96416029	96416122	+
chr13	50040467	50040704	-	chr12	112438542	112438789	-
chr13	64610795	64612404	+	chr1	79214757	79216344	+
chr13	84306057	84306278	+	chr17	47872704	47873031	+
chr13	89716762	89718018	-	chrX	131264118	131265380	-
chr14	101971743	101972233	-	chr14	62298631	62299087	-
chr14	10718540	10719145	+	chr1	93396901	93397643	+
chr14	118774484	118775418	-	chr7	102729110	102730057	-
chr1	44520760	44521076	-	chr4	77880012	77880322	-
chr14	57406356	57406757	-	chr3	138608096	138608799	-
chr14	63643966	63644548	-	chr13	99262545	99263130	-
chr14	79365758	79366375	-	chr4	57186874	57187497	-
chr15	41862852	41864288	-	chr4	175844963	175845189	-
chr15	44712973	44715850	+	chr8	110790140	110794517	+
chr15	7925072	7925662	+	chr4	179207848	179208439	+
chr15	88810448	88810846	-	chrX	82814837	82815320	-
chr15	92919660	92920353	+	chr12	42305057	42306014	+
chr16	13867688	13868189	-	chr1	145139024	145139569	-
chr16	15451987	15452855	+	chr3	155705092	155705965	+
chr16	65793614	65794583	+	chr3	186490377	186491265	+
chr17	13155633	13156056	+	chrX	53852384	53852807	+
chr17	16806122	16807151	-	chr4	161442980	161443463	-
chr17	22105456	22105718	-	chr2	42907227	42907419	-
chr17	36362944	36363216	+	chr9	126521498	126522054	+
chr17	37301291	37301778	-	chr1	156268563	156268980	-
chr17	53841647	53842297	-	chr12	4744514	4745306	-
chr17	65745077	65745632	-	chr11	93731808	93732384	-
chr17	74837627	74837976	-	chr10	34777510	34777806	-
chr17	79151549	79152055	+	chr4	57938848	57939298	+
chr1	78779710	78781434	-	chr10	21913520	21915215	-
chr18	24103459	24104049	+	chrX	150161973	150162564	+
chr18	57276383	57276935	-	chrX	12862983	12863549	-
chr19	37858755	37860074	+	chr3	68684855	68686175	+
chr2	10815337	10816147	+	chr1	45424228	45425067	+
chr2	150759268	150759622	+	chr22	24348439	24348799	+
chr2	15307360	15308161	+	chr5	98169085	98169415	+
chr2	19887596	19889024	-	chrX	150394700	150396187	-
chr2	20156674	20157700	-	chr4	164186726	164187735	-
chr2	3603633	3604699	+	chr3	119747586	119748715	+
chr2	44643784	44646471	+	chr12	89893869	89896447	+
chr2	51087506	51088330	+	chr5	172402513	172403377	+
chr2	53555157	53555892	-	chr20	4716314	4717319	-
chr2	75140152	75141282	-	chr2	177669714	177671065	-
chr2	94118203	94118524	+	chrX	146882522	146882820	+
chr3	125980920	125982176	+	chr12	32106822	32108202	+
chr3	140502059	140502601	-	chr3	181584138	181584942	-
chr3	157072980	157073747	+	chr7	152446163	152446820	+
chr3	27207272	27207597	-	chr1	68515042	68515428	-
chr3	37498348	37498994	-	chr15	35413773	35414285	-
chr3	59235467	59237267	+	chr2	92065994	92068221	+
chr3	67411127	67411705	-	chr1	28013159	28013980	-
chr3	86864046	86864355	+	chr2	170646602	170647395	+
chr3	99304472	99305302	+	chrX	109880066	109880900	+
chr4	107360732	107361314	+	chr12	115025998	115026607	+
chr4	107432632	107433067	-	chr11	86969892	86970301	-
chr4	108606180	108606425	-	chr8	26693333	26693817	-
chr4	119191733	119192687	-	chr4	182826942	182827620	-
chr4	34405138	34405427	+	chr12	7139411	7139702	+
chr4	52667936	52668368	-	chr9	107090606	107091470	-
chr4	5997047	5997774	+	chr10	53079585	53080414	+
chr4	75097648	75098104	+	chr14	39680984	39681353	+
chr5	32722372	32723342	+	chr3	98501031	98502037	+
chr5	93819630	93822069	-	chr8	39167427	39167962	-
chr6	128926886	128927990	-	chr11	113691579	113692607	-
chr6	22683738	22684495	+	chr12	76509490	76509880	+
chr6	37491412	37491988	+	chr5	42917515	42918086	+
chr6	43323803	43325548	+	chr4	155476359	155477137	+
chr6	85026185	85026710	+	chr11	73163064	73163389	+
chr6	85671911	85701376	+	chr2	73898156	73912212	+
chr6	90855812	90856444	+	chr7	139992551	139993139	+
chr6	94672170	94672566	+	chr7	2875254	2875656	+
chr7	103061281	103061896	-	chr9	127730575	127731137	-
chr7	107728780	107729130	+	chr10	70392127	70392484	+
chr7	110147481	110153687	-	chr11	4958600	4959524	-
chr7	143848891	143849753	+	chr4	13978789	13979652	+
chr7	26204176	26204845	-	chrX	63917757	63918427	-
chr7	52580334	52581013	+	chr12	63359104	63359749	+
chr7	57854706	57855702	+	chr11	21305324	21306501	+
chr7	65134178	65136596	-	chr15	32057945	32060404	-
chr7	88306281	88306629	-	chr3	135678116	135678432	-
chr8	15437864	15438195	+	chr12	91587490	91587696	+
chr8	15877659	15878209	+	chr1	203923767	203924908	+
chr8	35370341	35370741	-	chr5	95308744	95309150	-
chr8	3994625	3997506	+	chr7	56355922	56359118	+
chr8	5079293	5080993	+	chr5	25909611	25911343	+
chr8	75054931	75055105	+	chrX	73393724	73393901	+
chr8	81009935	81010310	-	chr5	115387613	115387986	-
chr8	83721528	83722253	-	chr5	82575739	82576463	-
chr9	108062626	108063136	+	chr7	64043110	64043585	+
chr9	120155761	120156219	+	chr12	102357678	102358118	+
chr9	31451354	31452242	+	chr1	167488772	167489823	+
chr9	43491133	43492026	+	chr20	46488531	46489416	+
chr9	63290975	63291882	-	chr2	194141392	194142339	-
chr9	95522411	95522836	-	chr11	123006630	123007084	-
chrX	100958362	100958806	-	chr1	94386821	94387282	-
chrX	102677436	102678039	+	chr5	104435173	104435799	+
chrX	135651063	135652047	+	chrX	105314471	105317190	+
chrX	146656908	146657879	-	chrX	67011796	67012737	-
chrX	14688008	14688506	-	chrX	42636721	42637330	-
chrX	159332689	159333086	-	chr9	16775575	16775855	-
chrX	20938065	20940147	+	chr8	138708966	138710710	+
chrX	5561889	5562136	+	chr1	168184642	168184890	+
chrX	5648339	5648930	+	chr8	11113528	11114111	+
chrX	57801214	57802021	+	chrX	139173901	139174720	+
chrX	79066814	79068069	-	chr14	22053415	22054745	-
chrX	92020314	92021020	-	chr2	7876568	7877226	-
chrX	92516655	92517162	-	chr3	37831411	37831936	-